species:   Rhsol
pid:       PID0470
parent:    Rhi-milR-23
paralog:   
locus:     KB317705.1:789597-789669
matures:   ['AGCUCUCGUUGGCUUCGUAGCAG', 'GUUGAAACUCGCGACAGCUGU']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317705.1:789597-789669

3 out of bounds
14 alignments
14 proper strand
14 stranded perfect matches

      ****************************       **************************      
UCUUCUCCGCAGCUCUCGUUGGCUUCGUAGCAGCUAAACCUGCUGUUGAAACUCGCGACAGCUGUAAAGGCAA
...(((..((((((.((((.((.((((..(((((.......))))))))).)).)))).))))))..)))...
----------AGCUCUCGUUGGCUUCGUAGCAG---------------------------------------- l=23 a=1 c
--------------------------------------------GUUGAAACUCGCGACAGCUGU-------- l=21 a=0 c*
--------GCAGCUCUCGUUGGCUUCGUAGCAGC--------------------------------------- l=26 a=5 ma
-------------------------------------------UGUUGAAACUCGCGACAGCUGUAA------ l=24 a=0 ma*

-------------------------------------ACCUGCUGUUGAAACUCGCGACAGC----------- l=25 a=1 
------------------------------------AACCUGCUGUUGAAACUCGCGAC-------------- l=23 a=1 
----------AGCUCUCGUUGGCUUCGUAGCAG---------------------------------------- l=23 a=1 (c)
----------AGCUCUCGUUGGCUUCGUAGCAGC--------------------------------------- l=24 a=1 
---------CAGCUCUCGUUGGCUUCGUAGCAG---------------------------------------- l=24 a=1 
--------GCAGCUCUCGUUGGCUUCGUAGCAGC--------------------------------------- l=26 a=5 (ma)
-------CGCAGCUCUCGUUGGCUUCGUAGCAGC--------------------------------------- l=27 a=2 
------CCGCAGCUCUCGUUGGCUUCGUAGCAGC--------------------------------------- l=28 a=2 

mb-01011
ax-1011001
ku-01
ss-101011101110
fn-111
